Scaffold Ga0153988_1000701

Overview

Basic Information

• Taxon OID: 3300012119
• Scaffold ID: Ga0153988_1000701
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC072 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8814
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Jones Lake State Park
• Coordinates
  • Lat. (^o): 34.6815
  • Long. (^o): -78.5955

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038022	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153988_100070111	F038022	AGG	LEKSKAYQCKISTEGKSSLSYAQIASNITNTLKIKEAFPALPNKKALKIHNAAFRQHANKAKKVQFTTKGPSRKQAIIPVPNNLTENIIGDASTHIFQINALLKNVKSSMYSKFIRPCSGGITIITNNVPNPSDLPIIEKYFKSVEGINGNEILSPRLLQSKSYLKITGLLYLRADSNKITSENVTDFMKHIDLFKNISLATKPCIIKASPKSDIAIIWIDIWNNQNGSKAKLLINHSFNLGRHIATVRATNMNLGVPQCYNCWK*