NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136581_1018071

Scaffold Ga0136581_1018071


Overview

Basic Information
Taxon OID3300012116 Open in IMG/M
Scaffold IDGa0136581_1018071 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #290
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)852
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007732Metagenome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0136581_10180713F007732GGAMSGEITVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCEKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAEIGR

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