NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136592_1030933

Scaffold Ga0136592_1030933


Overview

Basic Information
Taxon OID3300012115 Open in IMG/M
Scaffold IDGa0136592_1030933 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #256
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep Lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001551Metagenome673Y
F079391Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0136592_10309331F001551GGTGGMIYAQHFDAEEFREWSDDMSARLVTMLDVLRFKLGSPIAISASEYALGRNLGRNELSEHNIDEWGEVLAVDCFVSGVYNRAQAE
Ga0136592_10309332F079391N/AEVLGDNLRIHFEEEAVNTEASEDFDASVSYKYVTAYTTKVASRAEIVEAVMRCFYPSYGAEIASIQNGGSDKDTHQARRIQAKELADGWVQVT*

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