Scaffold Ga0154004_1010217

Overview

Basic Information

• Taxon OID: 3300012112
• Scaffold ID: Ga0154004_1010217
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL088 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1308
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Lake Talquin State Forest
• Coordinates
  • Lat. (^o): 30.4397
  • Long. (^o): -84.4952

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008928	Metagenome	325	Y
F008983	Metagenome	324	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154004_10102171	F008983	N/A	QAYKALYLDKTQGAIFGPEAIGEKSKEKKDLDAMEIDKIQRKEGKSL*
Ga0154004_10102172	F008928	N/A	MHNIVDYYNKPGNENKCPHKTSSQKPSPLGPSKNKNQLFRAWLMKMLEEDSDNPDFPPEDVKINSASIEEIPDSVPPSGKGKRTPKLDFPLGL*