NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136562_125838

Scaffold Ga0136562_125838


Overview

Basic Information
Taxon OID3300012108 Open in IMG/M
Scaffold IDGa0136562_125838 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Club lake, Antarctica - Metagenome #312
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)516
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Club lake
CoordinatesLat. (o)-68.5417Long. (o)78.2467Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094669Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0136562_1258382F094669GAGMVNGMADGEPRKTGGEGIGVCPKHFVPWVLTSVMGEFGVIVKGGCRFFFSDRGPFLKGGGDVGGEYSCKRVFDFFVHMLEAEMSLCAMRHTSSDAKLMGGGWT*

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