Scaffold Ga0136562_111366

Overview

Basic Information

• Taxon OID: 3300012108
• Scaffold ID: Ga0136562_111366
• Source Dataset Name: Saline lake microbial communities from Club lake, Antarctica - Metagenome #312
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1201
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Club lake
• Coordinates
  • Lat. (^o): -68.5417
  • Long. (^o): 78.2467

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002703	Metagenome	536	Y
F008667	Metagenome	330	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136562_1113662	F002703	GGAG	MSTASLSDKLAHAKRESKALKAQLEASRIAYADQLAAFEKSIYMPAVVDRRDLFEKTRDKNNER*
Ga0136562_1113663	F008667	N/A	GSADFRRANRNPSYQCLPRAEYVQRAVEMAPRGSQLAKKLTVDDVRAMRLNVHGRTDKHQAKVFGVSASMVYKIPKGERWGVVR*