Scaffold Ga0153957_106317

Overview

Basic Information

• Taxon OID: 3300012099
• Scaffold ID: Ga0153957_106317
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL041 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 724
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Galerina → Galerina marginata → Galerina marginata CBS 339.88 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Wekiwa Springs
• Coordinates
  • Lat. (^o): 28.7103
  • Long. (^o): -81.4846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000591	Metagenome	1003	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153957_1063171	F000591	GGA	MKNVVEFRASDMSRSSGVFAMELHCEFWCGNFGSGLPGIVFTAISLPLDEVLESSLVPTTVEYLFYFPLRFSVDDYGRWVVLCFLACDRVVQSRSELYYVEHWMELLHSVWQS*