Scaffold Ga0137389_10086027

Overview

Basic Information

• Taxon OID: 3300012096
• Scaffold ID: Ga0137389_10086027
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2468
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016048	Metagenome / Metatranscriptome	250	Y
F016465	Metagenome / Metatranscriptome	247	Y
F034738	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137389_100860271	F016465	N/A	MSDYAFFEYQAKLTNVGHAEDGGEPVHCMIKMKNVDRDGKCLQDIELHQQAGDNVLFVINPGPCRTISHSSIWNVTEEELHK
Ga0137389_100860272	F016048	N/A	MKISLFLTFLLTVASAFAADAMKFVSPDKSTTLVVDKSGRRDIIKLRSGKRVHRLFYDDLDSIFKAKIAEAFNASSNKVGKIVLPTFTSARWTSPDEVEIKGESVVIINDDDGDKFTFTASVSKSGTVQHLTVVPKR*
Ga0137389_100860274	F034738	N/A	MLVQSLVIINGGAATAVLAYYGAHNASGPGKSAALLTIILYCLGVFTAIFAGLYVRRTTQEWSSFWELKSYPDMAEREKVMEGHRQQAIRSKRWSTGLLVISEVFFLAASLCLAMSLG*