Scaffold Ga0136638_10060883

Overview

Basic Information

• Taxon OID: 3300012094
• Scaffold ID: Ga0136638_10060883
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ858 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1574
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0741
  • Long. (^o): 163.8918

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006620	Metagenome / Metatranscriptome	368	Y
F022920	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136638_100608831	F006620	GGA	MSNDPWTDPDPQPGDFDADLARLDPRYIAHHEGDPDATLLITVSVEGEDVRRLERIAEARGKTPGDVVAELLRDADQSAA*
Ga0136638_100608832	F022920	N/A	MAGDSISQLLATDVALDKLGARGISAEEAEQVPRNRHAMVRNPRWRGEPSPRLLLIGRTDGGRVLTLVVERTVDPTTWVVVTGWSSTERERRLLEASA*