Scaffold Ga0136638_10001421

Overview

Basic Information

• Taxon OID: 3300012094
• Scaffold ID: Ga0136638_10001421
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ858 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6654
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0741
  • Long. (^o): 163.8918

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038520	Metagenome / Metatranscriptome	165	Y
F042710	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136638_100014214	F042710	GGA	MSENSGNNCERSQIVTAFSPRECRYIDLLKLRAQELGLDCVVGDKRKRETWEALLDSYGVTKPVKPRLVPKLSQP*
Ga0136638_100014215	F038520	N/A	MKQKQPKHGGVRQGAGRRYKWRGGATKLIRIPISYVDQILRVVQYMDCNDGQLPTYIAFHTEGEDFVLPGYNASEESPYPDFNRFYKRRRSSVFGENFDNK*