Scaffold Ga0136632_10031227

Overview

Basic Information

• Taxon OID: 3300012093
• Scaffold ID: Ga0136632_10031227
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2421
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.1266
  • Long. (^o): 163.9666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003229	Metagenome / Metatranscriptome	499	Y
F006197	Metagenome	379	Y
F049417	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136632_100312272	F049417	AGGA	VREEEIMQIIPGPRGWYAYGQDEQGVEFLAPVACWALVESSSNVHRVVGLGAHGLGSVSRVEDLPGFVEYRYVPEEGGS*
Ga0136632_100312275	F006197	GGAGG	MRPFVALGKPMRLVGGTGPSREVRLQPGYSLDLSDPGVLVLRCPHGTAAAHFSARGAAAEAIEQEARMHYRERNRSA*
Ga0136632_100312276	F003229	AGGAG	VQHHPKPPTIAILGADTVVGRALCALLEGSGYQTRPLDAFPTGVVDELLEGTHLLLLVPRLDEGVREAFLGAMGKSTPQKASMPVIALSTIVEEGLPEKEGVLSVTWPCETKVLVDQIEAALLDVPAASAGSTTSTTQARTG*