NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136632_10021623

Scaffold Ga0136632_10021623


Overview

Basic Information
Taxon OID3300012093 Open in IMG/M
Scaffold IDGa0136632_10021623 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2863
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.1266Long. (o)163.9666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039477Metagenome163Y
F051755Metagenome / Metatranscriptome143N
F079686Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0136632_100216232F079686N/AVSINGRLGRLESASRKGSGRCGKCGLPPDGPGRIVLIDDGSPEEGFPDDPEERCGSCGRRLWYVLRVVYEGDDAA*
Ga0136632_100216235F039477AGGAGMGLRGKLRRLERGTRGNLARFVLEDGSRYYYNPESAECFLHACDCVRAGSEGAPFPEPPETIKALTRARNRAAALEATCGGGFGLFPYEREALLERGELVPVSWIHPIEDMSE*
Ga0136632_100216236F051755GGAGVDRGGALAGYLPKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIKEEGAEEDHARRAFVPWAAVRYIQLLEDPGEASGA*

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