Scaffold Ga0136632_10009130

Overview

Basic Information

• Taxon OID: 3300012093
• Scaffold ID: Ga0136632_10009130
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4124
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.1266
  • Long. (^o): 163.9666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010385	Metagenome	304	Y
F040315	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136632_100091303	F010385	GGAGG	MDTRESSAQPAHPSTEDHDQDERPHACNDGWITLGQLVVDPETGEETEEYALYLCRRCNV
Ga0136632_100091304	F040315	AGGAGG	MSRLLRVGDKVVNLDNTEYIIREDDGVVRIHFIHGDIALWDEQGEAFRQWVLSNAEYCEGSGEGW*