Scaffold Ga0136632_10000228

Overview

Basic Information

• Taxon OID: 3300012093
• Scaffold ID: Ga0136632_10000228
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15007
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.1266
  • Long. (^o): 163.9666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023704	Metagenome / Metatranscriptome	209	Y
F050947	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136632_100002284	F050947	AGAAG	LCYVRALARDRDLWWRGSVLRTIEAEGERVERRRSAVVEIRKHLAGLYRSFVLWASLYGEVDDHYEKERREQVVGLLEELSNQYLPRSVWLTEDSRKKVENFVIRSEGLCSEFSAEIEDQGYPRVRRSMERRVSKKLRPLKTEAESGLEAELAEPRRPGWRERLRK*
Ga0136632_100002287	F023704	GAGG	VERRIEEERARVEAEYRQVLKSSVEFERRIRDRWREKCLAKNWRIAELEERVADLERRLGEREDPLE*