Scaffold Ga0136625_1009814

Overview

Basic Information

• Taxon OID: 3300012091
• Scaffold ID: Ga0136625_1009814
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3565
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0872
  • Long. (^o): 163.7685

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009947	Metagenome	310	Y
F029351	Metagenome	188	Y
F062353	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136625_10098144	F029351	AGGAG	MEAVDLELDRLISRRASQDMRPDPDEQGELWKASVRAHNARRREENRLAWSEYHRLQAERHRSILEALISHHERRAAELSEIGGST*
Ga0136625_10098147	F062353	GGGGG	MSQAKLLRCSGCARRIRAHHPHIGVEDLATGAEFSYHAHPSCQKRCAEETAARMEAGRVYVMHHYHSALCPDKAPSWGCSGGCFDTPLAEVAN*
Ga0136625_10098148	F009947	AGAAGG	MASRERAVGVEPWDTEWAAERAAEALRYLGTHYPECLDVLRVLDEHETAAHEAARLGDREGYLDALRGYMKAGRDAALEIRRGAA*