Scaffold Ga0136625_1001661

Overview

Basic Information

• Taxon OID: 3300012091
• Scaffold ID: Ga0136625_1001661
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8046
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0872
  • Long. (^o): 163.7685

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021391	Metagenome	219	Y
F030871	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136625_10016614	F021391	GGAG	MSPMQEDPTLAPWSRLGESLEGSFAARARGLLAPAFVILDREGEEIGCLEIHGPQGAELEAGDLEARIEPSALSGYAMLAGDAKILEAEPVGALNTPEIRCMDRLYKGRLSLLRNTAWAGPAGERVTVRITGGLTNRNYGAVFDVGNAGSLPVAFFLLYLTVALRRGAYLAGTGSS*
Ga0136625_10016617	F030871	AGCAG	MREVLKDRFESIPVQVPRSEIEAMGVEIGLEDPAEAARIFDRLKGISWRGDYVRSEEGWVAAWVKEVN*