Scaffold Ga0154000_1117746

Overview

Basic Information

• Taxon OID: 3300012083
• Scaffold ID: Ga0154000_1117746
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC084 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 539
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → unclassified Leucoagaricus → Leucoagaricus sp. SymC.cos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.9174
  • Long. (^o): -79.3535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042109	Metagenome	158	Y
F055328	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154000_11177461	F055328	N/A	RMKKDEQVDMGETSLLELNGVNMSYCSAKEAIINALEECFLLLLKDP*
Ga0154000_11177462	F042109	GAG	VDDFWLLGISSHGKEEIWFVEMSANGHSILKQLGHKPRTPHMRRSASQRPNIFSIMPIMHSSILKSLVKLRSKSMLMCPSPVKFPLLTICPCINYKLLKELSTIEERWLRTISDMK