Scaffold Ga0154000_1005330

Overview

Basic Information

• Taxon OID: 3300012083
• Scaffold ID: Ga0154000_1005330
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC084 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3750
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.9174
  • Long. (^o): -79.3535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000950	Metagenome	822	Y
F039421	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154000_10053303	F039421	GGCGG	VPQSPVNKFTVLTIEDPNTIDSELINAPPSNPPVPAPLRKPKWEKRLPKLLSISALDI*
Ga0154000_10053307	F000950	GAG	MKLLKEESDNPESPPEDVNVNSASIEEIPDSVLPSGKGKRTPKLDFPLAENVIMAACS*