Scaffold Ga0154000_1003759

Overview

Basic Information

• Taxon OID: 3300012083
• Scaffold ID: Ga0154000_1003759
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC084 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4443
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.9174
  • Long. (^o): -79.3535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004107	Metagenome	452	Y
F018112	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154000_10037596	F004107	GAG	LGLDGDVSDGVNCRGFSAGENGGFTKVSIGGTEARLWSKDGGRKDIDPEIQSINEL*
Ga0154000_10037597	F018112	AGAAG	MYSPEGNFTGNDTTLEIILFDVPSNRHSSTGVVGVVGRECSRAKAESKKQCVDLESTSVWMGIGWRWSGAHTRGETRGIQREFGLERADTLRRIGLVVAQTSST*