Scaffold Ga0153999_1100008

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153999_1100008

Scaffold Ga0153999_1100008

Overview

Basic Information
Taxon OID	3300012078 Open in IMG/M
Scaffold ID	Ga0153999_1100008 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC083 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	513
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: North Carolina, Lumber River State Park
Coordinates	Lat. (^o)	34.9174	Long. (^o)	-79.3535	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053417	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153999_11000081	F053417	AGGA	MSDDPHDEFAAVVRRAGVTIPEERWEAMREAYYSMQALLKVLDDPRAYEDEPASMPRYDGAKP*

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