Scaffold Ga0153971_1015270

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153971_1015270

Scaffold Ga0153971_1015270

Overview

Basic Information
Taxon OID	3300012076 Open in IMG/M
Scaffold ID	Ga0153971_1015270 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA055 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1599
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, George L Smith State Park
Coordinates	Lat. (^o)	32.5453	Long. (^o)	-82.1226	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074228	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153971_10152701	F074228	GAG	VTHMEARDFSVRLGSDICISRVENPMGTLSSSLCQTLNKE

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