Scaffold Ga0153963_1006197

Overview

Basic Information

• Taxon OID: 3300012070
• Scaffold ID: Ga0153963_1006197
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL047 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2447
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.5711
  • Long. (^o): -82.2848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035142	Metagenome	172	Y
F057804	Metagenome	135	Y
F088011	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153963_10061973	F035142	N/A	MFGQLLKIVLQVAQGVSDGWGGVCRERHLSWSGVIRELEFVSGGRLEGSCPLRNSGALARRSNSAVRATEGDSRRFLS*
Ga0153963_10061975	F057804	GGA	MSMSTPPDSAGRGGGGLGGMESRAAGEERSTEKGVGRARAEHAGVTVVDQSVDWNALFANHAWSILRAAAYQASGSVSAGCPKSIVAI*
Ga0153963_10061976	F088011	AGGA	LDVQRLTAEQREELIEDLMALKDAVEEEEVCSAPEEGFV