Scaffold Ga0153963_1001211

Overview

Basic Information

• Taxon OID: 3300012070
• Scaffold ID: Ga0153963_1001211
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL047 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5201
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.5711
  • Long. (^o): -82.2848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001585	Metagenome	667	Y
F029613	Metagenome	187	Y
F057804	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153963_100121110	F029613	GGAGG	MCEGSPYIYLPSKVAASRSNSSGIENGIEVSLADVSWGGWVLPIVLCNEVWCLDIGSYLLRVVFSAKTLSLDQELESPPVPVTI*
Ga0153963_10012112	F057804	GGA	MGIPLDGASRDRGGLGGTEGGATGGEQSTEKGVGRARAEHAGVTVVDWSVDWNALFANRTWSILWAAAYLVSRSVSAGRPKGIVVI*
Ga0153963_10012118	F001585	GGAG	MLQEAVELPDVVKKESGCSFCCDHCVRWNEVYSLGDGVYYSHDGIMSGGLREFDHKIDTECIPPCVQNGEQLKFANRRVSPGFRPEAEITGAHILTDIPRYLKPPVVLGHQF*