Scaffold Ga0153963_1000680

Overview

Basic Information

• Taxon OID: 3300012070
• Scaffold ID: Ga0153963_1000680
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL047 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6388
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.5711
  • Long. (^o): -82.2848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037000	Metagenome	168	Y
F046117	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153963_10006802	F037000	N/A	MYLRAKRLKITASFYGPAKGLRAIYCLEKNPQSRIRGVESGSQVIRRGIVLSFSSYYLWEFGSFFYFFSFVVSLLCNLNKIL*
Ga0153963_10006804	F046117	N/A	MSLPSDIPQDVTNALGYLQHYLQELTERQHISESNINSTLAALTA*