Scaffold Ga0153965_1010366

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1010366
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2354
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029617	Metagenome	187	Y
F050816	Metagenome	144	Y
F098375	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_10103661	F050816	GGA	MHVALKALSARNVVDHTEWKTTDLWLGVARLIPSPTLPERLLQLVLH
Ga0153965_10103662	F029617	N/A	MEKVLAMHQSGFGASTSPNREGAVSSGASRAPKMTTHGPTRHQVLIPLDTPTAEVVVANATTAVESCNRSLVETHSKLRVESVRKAWDGISMSTNFVASAVELDVIKQ*
Ga0153965_10103663	F098375	GAG	VNWRFPLRAAWAKDLGTYLGAWGLVATFAGVGLVVAVLAGGGGGGALDTTRAGVDTFWEGAERLVEGGTLPLLLLFLLVTVVKGASSTAG*