Scaffold Ga0153965_1005715

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1005715
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3263
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006011	Metagenome	383	Y
F029617	Metagenome	187	Y
F049333	Metagenome	146	Y
F050816	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_10057152	F006011	N/A	VTLSSIEERQEQDVAVVNHISSQAKPESRETRVNKSYNSRNVLRVSRDLDHLGPVRVNRSTYYLVSFQRDSRGSIANKVPGRFLDKEDIILVLLRLKKSINQHIILVNVLQINV*
Ga0153965_10057153	F050816	GGA	MHVMLKALSARNVVDHMEWKTTDLWLGVARLIPSPTLLERLLQLVLHALIPSNV*
Ga0153965_10057154	F029617	N/A	MFSDLLIEKVLAMHQSGFGASASPNRGGAVHSGASRAPKMTTHRPTRCQVLIPLDTPTAEVIVANAAITVESCNRGLVEAYSKLKVELVHKAWDGISMSTNFIASAAELEVIKQWLKKVAGLTASTMIEPCLP*
Ga0153965_10057155	F049333	N/A	VATFVGVGLTVAILAGRDGGGALNITGAEVGTFWEGVEGLVEGGTLPLPLVFLLVTVVKGASSTAG*