Scaffold Ga0153965_1003994

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1003994
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3950
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F015042	Metagenome	257	Y
F022328	Metagenome	214	Y
F076690	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_10039941	F076690	N/A	MANYSKIKRVVPSQSHLVTAVGGNWRVEEWECIGEVRGRTGKLRREVVGRLDEGNTCENKMAQDHHLCLRSVEVPKG*
Ga0153965_10039944	F022328	GGAG	MEDGHLEGFWELRDGTVCGGVVDDWGRDGVELCKEVEN*
Ga0153965_10039946	F015042	N/A	MSHQSAAPSSGSNSIPLADQTIGRFTSGLPRRFRCLQLGTPRTLVRLRSSPPPVEPSEFHGVDPTTIPHINDDPDWVNAPIPVPTPAFQTPPIANCNPINNQLAKALQQLLENLNRGSALKLHQLKVHIPDTFDSSDPYKLNHFLFQY*
Ga0153965_10039947	F000523	N/A	MIAKPERRLRQTVKNVRAENDLLNDLGFNLCVVPRSPVVRLVAYFGVVKVIETEVLSR*