Scaffold Ga0153965_1002999

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1002999
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4542
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002648	Metagenome	539	Y
F078052	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_10029993	F002648	AGGA	MPVSASWRKRFSDHFVAHPSLKKARVQKIFSLSQVDCSGARRKYSVQELRKACLELRSPEKSGGEGSFGLVRCLDRVAGTGEGELTEGRDGGIGGGATVGTGAVMS*
Ga0153965_10029997	F078052	GGA	MALIILAEGGWIDGLDCGMKGLDSMIGATSCEDIESEVRLVGRLQSGG*