Scaffold Ga0153965_1002979

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1002979
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4556
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Termitomyces → unclassified Termitomyces → Termitomyces sp. J132 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F006537	Metagenome	370	Y
F023765	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_100297910	F006537	AGCAG	MDVDVVRKTRSLPPQGCYWCRETNYLVKDCPYYLDVWRLTAEQREELIEDLMALKDAVEEEKVCSAPEKGFV*
Ga0153965_100297911	F000383	N/A	LSLSYHTASFALRRTSVHLYFSGLPIDLRVVVLEPGITEDYVLPSEAGDSKKHPFGVGFVTENHVYHFRNLTYLVGGAIYVVHQYRARDALGVNAFRLDEVSIYEVACGSGVQKRLDGMHLAGVCGTDFYREDDRRSIGVEGIDGESFG*
Ga0153965_10029797	F023765	N/A	LRKARLELCSLEKSGGEGSFGLVRCLDGVAGTREGELTEGGDVGIGGGATIGAGTVMS*