Scaffold Ga0153965_1002172

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1002172
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5277
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000591	Metagenome	1003	Y
F068318	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_10021725	F068318	N/A	MEMEMSPYIHPSFKIATSQSDGLRMKNVVELCMSDMSQSSRVFVIELCYEFWCKDFRSGLPGIVFAAISFSLNEVLESSPVPMTVEYFLYFPLCFSVDDYG*
Ga0153965_10021728	F000591	N/A	MSQSNGLGVKDVVELYTSDVSQSSRVFVIELCCEFWYRDFGSGLPGIVFVAVSFSLNEVLESSPVPTTVKYFLYFPLCFSVNNYRQWVVLCFASCNWVVQSQSELYYVEHWMELLHPVW*