Scaffold Ga0153965_1001998

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1001998
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5480
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002193	Metagenome	584	Y
F023765	Metagenome	208	Y
F052984	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_100199810	F052984	GGAG	LKGLIGQPCLVDLLGSYVLSLQISVSRSSERHGSDLALDARLEVLMELYHKSLGVSVSGVGDQGQESVQVVIHHPVSLIIRGAFQSINGICFCIDRKELALELLFEVGPGLDGKDASVHFLAKEVLGTPCSSSIFEKGKGPQDFLLVTAELFQGQV*
Ga0153965_100199811	F023765	AGG	LKKAQLELHSPEKSGGEGSFGLVCCLDRADRTGEGGLTEGEDIGIGGRAAVGAEAGPVIS
Ga0153965_10019982	F002193	GAG	MFQEAVEFPNVIEEESGCSFRCDRRVRRNKVYSFGDSIHNCHNGVMSRGLQEFDHKINTEGVPPCIWHGERLKLANRRMLPRFRLEAKIASTHILANVPRHLGPPVVPRH*