Scaffold Ga0153965_1001934

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1001934
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5551
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F006537	Metagenome	370	Y
F023765	Metagenome	208	Y
F038021	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_100193411	F038021	N/A	MLYLHLALEQFTYNKKKIFWTLAFFKDRHATKWSENLFHQEADTSIFLI*
Ga0153965_100193412	F023765	N/A	MQELRKACLELCLPEKSGGEGSFGLVCCLDGVDRTGEGGLTGGRDRGIGGRATVGVGVVMS*
Ga0153965_10019347	F000383	N/A	VVLELDVTEDHVLPSEARDSEERPFGVGFVTENHVYHFGDLTCLVRGAIHIVHWYGARDAPGVNVFRLDEVSIYKVACSSGIQKCLDGMHLAGVCGADFYWQDD*
Ga0153965_10019348	F006537	GGA	MDVDTVWKTCSLPLQGCYQCREANHLVKNCPHCLDVQRLTAKQREELIEDLMALKDAVEEEEVCLAPEEGFV*