Scaffold Ga0153965_1001903

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1001903
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5582
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001569	Metagenome	669	Y
F002193	Metagenome	584	Y
F006537	Metagenome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_10019033	F002193	N/A	LRSAVGDNTFQEAVEFSNVIEEESGCSFHCDHCVHQNEVYSFGDSIHNRHNGVMSGGLWEFDHKIDTEGVPPCIRHREWLKLANRRISPRFRLEAKITSTHILADVPRHLGPPVVLGH*
Ga0153965_10019038	F001569	N/A	LPVDLRIIVLEPGVTEDHALLPEVGDGEEHPFGVGFITEDYVYHFRDLSSFIRGTIYVEHRYGVRDVPGANTLCMDKIFIYEIACGSGVQKRFDGMYFASVTGTDFYREDNRRSTGVEGVSRELSR*
Ga0153965_10019039	F006537	GAGG	MDVDAVWKACSLSPRGCYQCGEANYLVRDCLHCLDVRELTVEQRKELIEDLMALKDRVEEEEVGPSPEEDFV*