Scaffold Ga0153965_1001773

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1001773
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5750
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F001585	Metagenome	667	Y
F016627	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_100177310	F016627	N/A	MKQEVKFSQMQGPTSLATVKFLGRHEILKVLVVGPDFHQMGRSFQEVPLLF*
Ga0153965_100177312	F001585	N/A	MVVVRGKEGMHANMLREAVELPDVMKKESGRSFRCDRHVRQNEVYSLGDGVYYSHDGIMSGGLWEFDHEINTECIPPCVRNREQLKFANRRVSPGFCPEAEITGAHILTDIPRHLRPPVVPGHQF*
Ga0153965_10017736	F000383	N/A	MASFTSRGTLVHLHFSGLPIDLRIVIFEPGITEDHALSSETRDSEERSFGVGFVMENHVYHFRDLTCLIGGAVHVVHRYRARDAPGVNTFHTDEVLIYEVVHGSGVQKRLDRMHLAGVCGTNFYREDD*