Scaffold Ga0153965_1000477

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1000477
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9278
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020830	Metagenome	221	Y
F051605	Metagenome	143	Y
F102228	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_100047720	F102228	N/A	MSRTQVGIPAPIEVVNHKSMVPEPGWFNRDRKTFED*
Ga0153965_10004774	F020830	N/A	MLLQSPKTQELKYKKGTIATFGFPSTPFYPKSSQNPTDNMALSFLCDNAFSHQVLFIKDNASSLPLLSRIFFCLSLSFS*
Ga0153965_10004776	F051605	GAG	LDGALNYFKLVIRLLISSNNYMLGFSDAETIDLLLDNVVVDLSFGGREGHIKMTSFSFSSLFSLGGTIWFDL*