Scaffold Ga0153965_1000436

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1000436
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9516
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001569	Metagenome	669	Y
F002193	Metagenome	584	Y
F020638	Metagenome	222	Y
F032889	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_100043614	F032889	GAG	MDVSGFPSLDDIGDEDPNNHILSWTDMTDPDSHQQAMMIATILNNQDQYGDLDCEDMKT*
Ga0153965_10004362	F002193	GAG	MFREAMEFPNIMEEESSCSFCCDRRVHRNEVYSFGDSIHDCHNSVISRGLREFDHKIDTEGVPPCVQHRERLKLANRRISPRFCPEAKITSTHILADVPRHLGPPVVLGH*
Ga0153965_10004368	F020638	GGA	VEAKAINICQSGPSPEHMEDSEEDETSLRICEVEYEPGDRLFMTRILLEPAIENLCATFTISQKLAEGAR*
Ga0153965_10004369	F001569	N/A	MVLEPDVTKDHALLPKVGDGKEHPFGVGFITEDHVYHFRDLSGFIRGTVHVEHWYGARDVPGANILRMDKIFIYEIACSSGVQKRFDGMYFASVSGTDLYRENDRRSVGIEGVGGESSG*