Scaffold Ga0153965_1000308

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1000308
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10608
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013968	Metagenome	266	Y
F017770	Metagenome	238	Y
F018491	Metagenome	234	Y
F029617	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_100030810	F013968	N/A	MIEEGEELCNIKGDDTSLEAFGPARVNQVSEKETSIFSRPLSDATELVGMEDTVLDSIKLESPSNHFLNELAKGVEQDNGLKGLGSVVDWFARLRDNDRN*
Ga0153965_100030812	F017770	AGTAG	MVSSSNLGTGSIFMCQEVKGLLCLARAVPEVNGAIRVIGEEIPKGLDNGKGVSLA*
Ga0153965_100030813	F018491	GAG	MPRIQSQIKLREMRLRNYLQHKEKKNQVRYSWRLRGLRGWTILRREGKGTRVLLQELDKVLDSWH*
Ga0153965_10003087	F029617	N/A	MFPDLSIEKVLAMHQSGFGASASLNRKGVVYSSTSRAPKMTTHGPTRRQVLIPLDTPTTEVIVANAATAVESCNRGLVEAHSKLRVESVCKTWDGISMSTNFVASAAELDVIKQ*