Scaffold Ga0153965_1000173

Overview

Basic Information

• Taxon OID: 3300012069
• Scaffold ID: Ga0153965_1000173
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12521
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Paynes
• Coordinates
  • Lat. (^o): 27.6228
  • Long. (^o): -81.8094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F004107	Metagenome	452	Y
F022328	Metagenome	214	Y
F071824	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153965_10001731	F071824	N/A	LVVGGSFQSIDCVHFHINREEVDLELLFKVLLVLDRENASVCFLTEHIFGLLGGITTFEECKGPEDFLLFVMELLWGQADIERAGVQKCMAVVMFSTEVQRTRELGMCLSCCRSRGQRHWRR*
Ga0153965_10001737	F000523	N/A	VIAKPERRLQQTVKDVGVENDLLNDLGFNLCVASRSPVMRLVTYFGVVEVVKTEVLSGQVEELERMNYN*
Ga0153965_10001738	F022328	GAGG	VDRDGDLIMEDGHLEGFWELWDGAVCGGVVDDWGQDGAELCKEAEY*
Ga0153965_10001739	F004107	GAG	LELDGDVSDRVNCRGFSAGENGGFTKVSTGGAKAGLWSKDGGRKDTDPETQSINRL*