NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153965_1000038

Scaffold Ga0153965_1000038


Overview

Basic Information
Taxon OID3300012069 Open in IMG/M
Scaffold IDGa0153965_1000038 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18604
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (32.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Paynes
CoordinatesLat. (o)27.6228Long. (o)-81.8094Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000488Metagenome1084Y
F000591Metagenome1003Y
F029614Metagenome187Y
F041522Metagenome159Y
F065290Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0153965_100003811F041522N/AVPRSNSSGLEKSVEVHLADVSWGGWVLQVIFRNEVWRLDIGGHLPRVVLSAETFALNQELEPPPVPATIQHLFYLLLRFSVDDNGWQWGSWLPSWYQIVQSGRQLDYVEHQVQLSQSMGQPKSVG*
Ga0153965_100003812F000488N/AMPAIRNTKKTLVEHLLLKQESVKDKSLLKRIRINPTPSTELYNKLVGADPCWHKVDNFYFSSCPPELYFHKNKKLLCIKEYKELLEPTLDRISPFFTKM*
Ga0153965_100003813F065290N/AVDQVLNGAINHYNSALSMAYNKIATLEAEVTCLQRELSRLSGGDVASKTKVPELPTFVGSENKIQLHNWLSSLLFGIWHHYR*
Ga0153965_100003825F000591AGGMEVSPYIHPPFKIATSQSNGLRVKNVVELCAPDMSWSTRVFAVKFRCQFQSKDFGGGLPGIVFTAVSFLLNEILESSLVPTTVEYLFHFPLYFSVDDYRQWVIRRFLSCDRVIQSQSKLYYVEHWVELLHPV*
Ga0153965_10000384F029614N/ALVVRGAFQSINGICFCIDQKELTPELLFEVGPRLDWKNAGVHLLAKEVLGPPRGTSVLEKGKGPKDFLLLIAELLRSQA*
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