Scaffold Ga0153969_1004288

Overview

Basic Information

• Taxon OID: 3300012066
• Scaffold ID: Ga0153969_1004288
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA053 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2970
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.545
  • Long. (^o): -82.122

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000488	Metagenome	1084	Y
F000950	Metagenome	822	Y
F070730	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153969_10042882	F000950	GAG	MLEENSDNPDSFPENIKINSASIEEIPDLVPLSGKGKGTPKLDFPLGL*
Ga0153969_10042884	F070730	N/A	MVDCSIEHLVNVVLEKERSSLMCILQYLYLSLILGHVLSAYAIFDKCIPILSTEIRKENSSGKVVESRHIYLSN*
Ga0153969_10042885	F000488	N/A	MPAIRNTKTLAEHLLLKKESMTEKSLLKRIGIEPTLSTKLYDRLVEADSCWHKVDDFYFASCPPELYFHKTKKLLYIKEYKELLEPTLDCISPFFTKMSENKTWAEDP*