NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153937_1092040

Scaffold Ga0153937_1092040


Overview

Basic Information
Taxon OID3300012060 Open in IMG/M
Scaffold IDGa0153937_1092040 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New York, USA - TSNY021 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Grifolaceae → Grifola → Grifola frondosa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New York, Robert Murphy County Park
CoordinatesLat. (o)40.8926Long. (o)-72.8224Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083491Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0153937_10920402F083491N/ASSLVQENLENPYKTGTMRMDYFCIEERFIFPIVWKTPCNNRSLRCTMICHLPDTQVGRRSISWSPEITGGLG*

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