Scaffold Ga0153991_1004251

Overview

Basic Information

• Taxon OID: 3300012059
• Scaffold ID: Ga0153991_1004251
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC075 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3586
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Jones Lake State Park
• Coordinates
  • Lat. (^o): 34.5814
  • Long. (^o): -78.4485

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000977	Metagenome	815	Y
F003619	Metagenome	476	Y
F021220	Metagenome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153991_10042512	F021220	N/A	MLKGSWGEGGSGGNRKKLKYEAQLICNIKIVEMMVGSI*
Ga0153991_10042513	F003619	GAGG	VNVLYHIPYSFWSQDAVVAWATFYEIAGLKSLANHRLGSYHTHKVWCGGADEGLIECGKAHEWFTDYSISELVTVCKGGHLRNTM*
Ga0153991_10042515	F000977	AGCAG	MTSRQQIKSLSVTSDPITAGLSKEMDALMDDNHIADARTHCHMFLDHIRSRKKLVWGLGNNGQE*