Scaffold Ga0153991_1000419

Overview

Basic Information

• Taxon OID: 3300012059
• Scaffold ID: Ga0153991_1000419
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC075 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10835
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Jones Lake State Park
• Coordinates
  • Lat. (^o): 34.5814
  • Long. (^o): -78.4485

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004107	Metagenome	452	Y
F017427	Metagenome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153991_10004195	F017427	AGAAG	MHLPEGNFTGNDTTSEIILFKVLSNRRSSTGGVGVVGRECPWAKAESKKQCIDLESTGVWMGIG*
Ga0153991_10004196	F004107	GAG	LGLDGDVSDGVNCRGFSTGENRGFTKISTGGTKAGLWSKDGGRKDIDPETQSINGL*