Scaffold Ga0153995_1019423

Overview

Basic Information

• Taxon OID: 3300012057
• Scaffold ID: Ga0153995_1019423
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC079 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1257
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.3888
  • Long. (^o): -79.0011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029617	Metagenome	187	Y
F032107	Metagenome	180	Y
F049333	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153995_10194231	F032107	N/A	PQAPLSTSLMPHGPNHGTAESFSQVEGGSTVADTCDVTGDSDTLVICDTDGSVTHDHDSLSQTSQPVTSDIVTHDVTHDSDLWDGEHHITSLSSYFGYLENDAKVLASSVLHIACFIQKYPIGSRPIEQFPLILGVGSIMWHLF*
Ga0153995_10194232	F049333	N/A	VATFAGVGLAVAVLAGGDGGALDTTGVGVGTFWEGVEKLVEGGTLPLPLLFLLVTVVKGASSTAG*
Ga0153995_10194233	F029617	N/A	MEKVPAMYQSGFGASVSPNRRGAVSSGASRAPKMTIYRPTRCQVLIPLDTPTAEVIVVNATTTVESCNRGLVETHSKLRVESVHKAWDRISMSTNFVALAAELEVIKQWLKK