Scaffold Ga0153995_1012136

Overview

Basic Information

• Taxon OID: 3300012057
• Scaffold ID: Ga0153995_1012136
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC079 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1796
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.3888
  • Long. (^o): -79.0011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000488	Metagenome	1084	Y
F000977	Metagenome	815	Y
F003619	Metagenome	476	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153995_10121362	F000488	N/A	MSAIRNTKKLLVERLSLKQESVKDKSLLERIGMNPTPSTKLYDKLVEADSCWHKVDNLYFLSCPPELHFCKNKKLLRIKEYKELLEPTLDRISPFFTKMSENKTWAEDL*
Ga0153995_10121363	F003619	GAGG	VNILYHIPYSFRSQDTAVTRAIFYGIAGLKSLANHRLRSYHTHKVWCGGADEGLIKCGKAHEWFTDYSISELVTVCKDGHLRDTMRGRSRSNLPSFQLFLHYR*
Ga0153995_10121364	F000977	GGA	MTPRQQIKSLSVTSDPITAGLSQETDVPPGDDRIADTRTYCHVFLDRIQSRRKPVQGSENDGQE*