Scaffold Ga0153995_1001875

Overview

Basic Information

• Taxon OID: 3300012057
• Scaffold ID: Ga0153995_1001875
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC079 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5236
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.3888
  • Long. (^o): -79.0011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039421	Metagenome	163	Y
F070726	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153995_10018751	F070726	N/A	EDVNDFNLQTKELGCNYWSTYTKSGIGGVQVTSLHRDPIGVNNRSLGVKN*
Ga0153995_100187510	F039421	GAGG	VQPAISVPRSPVNKFTVLTIEDSNTIDSEPVDAPPLTPLIPAPLCKSKWKRRLPKLLSISALDA*