Scaffold Ga0153925_1008048

Overview

Basic Information

• Taxon OID: 3300012056
• Scaffold ID: Ga0153925_1008048
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ009 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1384
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Meruliaceae → Hermanssonia → Hermanssonia centrifuga (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Wharton State Forest
• Coordinates
  • Lat. (^o): 39.7091
  • Long. (^o): -74.664

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000950	Metagenome	822	Y
F008983	Metagenome	324	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153925_10080482	F000950	GAG	MKMLKEDSNGLDFPSEDIKINSMSIKEIPDPVSPSGKKKRTPKLDFPLGL*
Ga0153925_10080483	F008983	N/A	MQAYKALYLNKTQSTIFGPEAIGEKSGEKKDPDAMEIDEI*