NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1012569

Scaffold Ga0154007_1012569


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1012569 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1545
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000523Metagenome1050Y
F014690Metagenome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_10125691F014690AGAAGGMSQGRRGGERLIERSWLQLMCCAPVSSREIGRVFRSEGSRQDRGPKKLDEGVGVDKERLGPDDVNLQTAE
Ga0154007_10125692F000523N/AVIAKPERRLRQTVKDIEVENDLLNDLGFNLCIVPQSPVVRLVVYFGVVEVIKTEVLSRQVEESERISYD*
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