NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1012336

Scaffold Ga0154007_1012336


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1012336 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000709Metagenome925Y
F008737Metagenome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_10123361F008737GGAGLKGFIGEPRLVDPPGRYVPGLRISVSGPSEGHGGDLALNVRPEASAELHHKSLGVSVSGIGDQGEEAVQVIVHRLVSLVVRGAFQSVNGISFCIDRKELTPELLFKVSPRLDRKNAGVCLLAKEVFGPPRGTSVFEKGEGPKDFLLIAAELLRSQA*
Ga0154007_10123362F000709N/APFGVGLITEDYVHHFGDLPRFVRGAVYVEHWYGTRDALGTDTFRTDKILVYEVASGSGVQKRFDGMHLAGVGGTDLDGQDDRRSAGVESVGGEPFGESFLPFGSPRQGCPNRSGGGERGCIYRFTNFCIDFFYV*

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