Scaffold Ga0154007_1009398

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0154007_1009398

Scaffold Ga0154007_1009398

Overview

Basic Information
Taxon OID	3300012054 Open in IMG/M
Scaffold ID	Ga0154007_1009398 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1931
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Connecticut, Klassen Lab
Coordinates	Lat. (^o)	41.8102	Long. (^o)	-72.2564	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029615	Metagenome	187	Y
F080719	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_10093981	F080719	GGA	MDVHQLTTEQREELIEDLLALKDIVPIEESCLLKEEDFV*
Ga0154007_10093982	F029615	N/A	MRTPIDRVVGRAFRVTGGGRVRGNLAMGNGGGWAEMVLSNVEGVEHDTDWKASFARHT*

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